Package forestry.api.genetics

Interface ITaxon

public interface ITaxon

Biological classifications from domain down to genus. Used by the Forestry analyzers to display hierarchies.

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static final record	ITaxon.TaxonAllele	A default allele associated with a taxon.

Method Summary

Modifier and Type	Method	Description
Map<IChromosome<?>,ITaxon.TaxonAllele>	alleles()	A taxon may have alleles added to it so that its species will inherit a common set of default alleles upon registration.
List<ITaxon>	children()
String	name()
ITaxon	parent()
TaxonomicRank	rank()
List<ISpecies<?>>	species()

Method Details

name

String name()

Returns:

The lowercase name of the taxon.

rank

TaxonomicRank rank()

Returns:

The level inside the full hierarchy this particular taxon is located at.

children

List<ITaxon> children()

Returns:

The taxa directly below this taxon. Guaranteed to be empty if this taxon is a TaxonomicRank.GENUS.

species

List<ISpecies<?>> species()

Returns:

The member species of this group. Empty if this taxon is not a TaxonomicRank.GENUS.

parent

@Nullable
ITaxon parent()

Returns:

The parent taxon, or null if this is a TaxonomicRank.DOMAIN.

alleles

Map<IChromosome<?>,ITaxon.TaxonAllele> alleles()

A taxon may have alleles added to it so that its species will inherit a common set of default alleles upon registration. For example, the default genomes of all bee species in the boggy genus will have the Mushroom flower type allele.

Returns:

A map of default alleles inherited by members of this taxon. Does not include alleles from parent taxa.